Detailed information of SNP:
|
SNP ID:
sf0128529799(Gbrowse)
Chromosome: chr01 Position: 28529799 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 82.44% | 17.56% |
| All Indica | 782 | 77.62% | 22.38% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 360 | 64.44% | 35.56% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128529799 | G->A | LOC_Os01g49614(LOC_Os01g49614.1) | INTRON |
| sf0128529799 | G->A | LOC_Os01g49614(LOC_Os01g49614.3) | INTRON |