Detailed information of SNP:
|
SNP ID:
sf0128530396(Gbrowse)
Chromosome: chr01 Position: 28530396 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 68.79% | 31.21% |
| All Indica | 794 | 99.12% | 0.88% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128530396 | A->G | LOC_Os01g49614(LOC_Os01g49614.1) | INTRON |
| sf0128530396 | A->G | LOC_Os01g49614(LOC_Os01g49614.3) | INTRON |