Detailed information of SNP:
|
SNP ID:
sf0128533072(Gbrowse)
Chromosome: chr01 Position: 28533072 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 62.32% | 37.68% |
| All Indica | 792 | 41.29% | 58.71% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 60.22% | 39.78% |
| Indica II | 211 | 11.37% | 88.63% |
| Indica Intermediate | 209 | 37.80% | 62.20% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128533072 | T->C | LOC_Os01g49614(LOC_Os01g49614.1) | UTR_3_PRIME |