Detailed information of SNP:
|
SNP ID:
sf0128559713(Gbrowse)
Chromosome: chr01 Position: 28559713 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 61.79% | 38.21% |
| All Indica | 782 | 37.34% | 62.66% |
| All Japonica | 464 | 95.91% | 4.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 56.87% | 43.13% |
| Indica II | 209 | 3.83% | 96.17% |
| Indica Intermediate | 202 | 36.14% | 63.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 61 | 72.13% | 27.87% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128559713 | T->A | INTERGENIC | None |