Detailed information of SNP:
|
SNP ID:
sf0128561815(Gbrowse)
Chromosome: chr01 Position: 28561815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.90% | 31.10% |
| All Indica | 798 | 52.76% | 47.24% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 42.13% | 57.87% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128561815 | C->T | INTERGENIC | None |