Detailed information of SNP:
|
SNP ID:
sf0128645875(Gbrowse)
Chromosome: chr01 Position: 28645875 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 56.24% | 43.76% |
| All Indica | 789 | 92.78% | 7.22% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128645875 | T->A | LOC_Os01g49870(LOC_Os01g49870.1) | INTRON |