Detailed information of SNP:
|
SNP ID:
sf0128722816(Gbrowse)
Chromosome: chr01 Position: 28722816 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 79.00% | 21.00% |
| All Indica | 744 | 68.95% | 31.05% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 64 | 50.00% | 50.00% |
| Indica I | 356 | 78.09% | 21.91% |
| Indica II | 194 | 51.03% | 48.97% |
| Indica Intermediate | 194 | 70.10% | 29.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128722816 | G->A | INTERGENIC | None |