Detailed information of SNP:
|
SNP ID:
sf0128740974(Gbrowse)
Chromosome: chr01 Position: 28740974 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 94.39% | 5.61% |
| All Indica | 712 | 91.15% | 8.85% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 359 | 91.09% | 8.91% |
| Indica II | 162 | 93.83% | 6.17% |
| Indica Intermediate | 191 | 89.01% | 10.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128740974 | C->A | LOC_Os01g50030(LOC_Os01g50030.1) | INTRON |
| sf0128740974 | C->A | LOC_Os01g50032(LOC_Os01g50032.1) | INTRON |