Detailed information of SNP:
|
SNP ID:
sf0128838089(Gbrowse)
Chromosome: chr01 Position: 28838089 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.76% | 45.24% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128838089 | T->C | INTERGENIC | None |