Detailed information of SNP:



SNP ID: sf0128849319(Gbrowse)

Chromosome: chr01

Position: 28849319
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 98.45% 1.55%
All Indica799 99.87% 0.13%
All Japonica497 96.38% 3.62%
Aus67 97.01% 2.99%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 81.91% 18.09%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0128849319 C->T INTERGENIC None