Detailed information of SNP:
|
SNP ID:
sf0128854469(Gbrowse)
Chromosome: chr01 Position: 28854469 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 97.55% | 2.45% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 468 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 320 | 93.75% | 6.25% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 61 | 81.97% | 18.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128854469 | T->A | LOC_Os01g50220(LOC_Os01g50220.1) | INTRON |