Detailed information of SNP:
|
SNP ID:
sf0128865870(Gbrowse)
Chromosome: chr01 Position: 28865870 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.69% | 44.31% |
| All Indica | 797 | 90.97% | 9.03% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128865870 | G->A | INTERGENIC | None |