Detailed information of SNP:
|
SNP ID:
sf0128868829(Gbrowse)
Chromosome: chr01 Position: 28868829 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 50.96% | 49.04% |
| All Indica | 794 | 83.63% | 16.37% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 373 | 81.77% | 18.23% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 208 | 79.33% | 20.67% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128868829 | G->A | INTERGENIC | None |