Detailed information of SNP:
|
SNP ID:
sf0128901081(Gbrowse)
Chromosome: chr01 Position: 28901081 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.74% | 44.26% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128901081 | G->A | INTERGENIC | None |