Detailed information of SNP:
|
SNP ID:
sf0128950086(Gbrowse)
Chromosome: chr01 Position: 28950086 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 98.64% | 1.36% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 476 | 96.64% | 3.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 98.75% | 1.25% |
| Tropical Japonica | 89 | 86.52% | 13.48% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128950086 | G->A | INTERGENIC | None |