Detailed information of SNP:
|
SNP ID:
sf0128961022(Gbrowse)
Chromosome: chr01 Position: 28961022 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.38% | 39.62% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128961022 | C->A | INTERGENIC | None |