Detailed information of SNP:
|
SNP ID:
sf0128987084(Gbrowse)
Chromosome: chr01 Position: 28987084 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1269 | 70.06% | 29.94% |
| All Indica | 665 | 45.56% | 54.44% |
| All Japonica | 490 | 98.98% | 1.02% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 306 | 52.94% | 47.06% |
| Indica II | 177 | 36.16% | 63.84% |
| Indica Intermediate | 182 | 42.31% | 57.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128987084 | G->A | INTERGENIC | None |