Detailed information of SNP:
|
SNP ID:
sf0129006766(Gbrowse)
Chromosome: chr01 Position: 29006766 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 52.34% | 47.66% |
| All Indica | 775 | 79.35% | 20.65% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 361 | 76.45% | 23.55% |
| Indica II | 207 | 82.13% | 17.87% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129006766 | C->A | INTERGENIC | None |