Detailed information of SNP:
|
SNP ID:
sf0129044064(Gbrowse)
Chromosome: chr01 Position: 29044064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 89.78% | 10.22% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 428 | 67.99% | 32.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 268 | 50.37% | 49.63% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129044064 | G->A | LOC_Os01g50590(LOC_Os01g50590.1) | Non-Synonymous SNP |