Detailed information of SNP:
|
SNP ID:
sf0129063734(Gbrowse)
Chromosome: chr01 Position: 29063734 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 90.26% | 9.74% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 486 | 74.28% | 25.72% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 87.58% | 12.42% |
| Tropical Japonica | 92 | 45.65% | 54.35% |
| Japonica Intermediate | 64 | 46.88% | 53.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129063734 | T->C | INTERGENIC | None |