Detailed information of SNP:
|
SNP ID:
sf0129094921(Gbrowse)
Chromosome: chr01 Position: 29094921 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 90.37% | 9.63% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 480 | 74.17% | 25.83% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 86.83% | 13.17% |
| Tropical Japonica | 83 | 44.58% | 55.42% |
| Japonica Intermediate | 63 | 46.03% | 53.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129094921 | C->T | LOC_Os01g50660(LOC_Os01g50660.1) | Non-Synonymous SNP |