Detailed information of SNP:
|
SNP ID:
sf0129099311(Gbrowse)
Chromosome: chr01 Position: 29099311 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 93.36% | 6.64% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 480 | 82.50% | 17.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 91.41% | 8.59% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 61 | 62.30% | 37.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129099311 | G->A | INTERGENIC | None |