Detailed information of SNP:
|
SNP ID:
sf0129100245(Gbrowse)
Chromosome: chr01 Position: 29100245 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 89.59% | 10.41% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 482 | 71.58% | 28.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 85.24% | 14.76% |
| Tropical Japonica | 86 | 40.70% | 59.30% |
| Japonica Intermediate | 64 | 42.19% | 57.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129100245 | G->A | LOC_Os01g50670(LOC_Os01g50670.1) | Non-Synonymous SNP |