Detailed information of SNP:
SNP ID:
sf0129127655(Gbrowse)
Chromosome: chr01 Position: 29127655 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1413 | 97.88% | 2.12% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 492 | 94.51% | 5.49% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 332 | 93.07% | 6.93% |
Tropical Japonica | 93 | 100.00% | 0.00% |
Japonica Intermediate | 67 | 94.03% | 5.97% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0129127655 | G->A | INTERGENIC | None |