Detailed information of SNP:
|
SNP ID:
sf0129131919(Gbrowse)
Chromosome: chr01 Position: 29131919 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 91.63% | 8.37% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 480 | 77.50% | 22.50% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 92.71% | 7.29% |
| Tropical Japonica | 88 | 38.64% | 61.36% |
| Japonica Intermediate | 63 | 52.38% | 47.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129131919 | T->A | LOC_Os01g50720(LOC_Os01g50720.1) | Non-Synonymous SNP |