Detailed information of SNP:



SNP ID: sf0129153543(Gbrowse)

Chromosome: chr01

Position: 29153543
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1352 75.59% 24.41%
All Indica798 76.57% 23.43%
All Japonica438 85.16% 14.84%
Aus66 3.03% 96.97%
Indica I375 56.53% 43.47%
Indica II213 99.06% 0.94%
Indica Intermediate210 89.52% 10.48%
Temperate Japonica310 90.65% 9.35%
Tropical Japonica74 81.08% 18.92%
Japonica Intermediate54 59.26% 40.74%
Group VI/Aromatic14 100.00% 0.00%
Intermediate36 61.11% 38.89%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0129153543 G->T LOC_Os01g50750(LOC_Os01g50750.1) UTR_3_PRIME