Detailed information of SNP:
|
SNP ID:
sf0129163707(Gbrowse)
Chromosome: chr01 Position: 29163707 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1271 | 61.53% | 38.47% |
| All Indica | 783 | 73.31% | 26.69% |
| All Japonica | 370 | 27.57% | 72.43% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 54.50% | 45.50% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 257 | 8.95% | 91.05% |
| Tropical Japonica | 66 | 84.85% | 15.15% |
| Japonica Intermediate | 47 | 48.94% | 51.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129163707 | A->T | INTERGENIC | None |