Detailed information of SNP:
|
SNP ID:
sf0129163708(Gbrowse)
Chromosome: chr01 Position: 29163708 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 29.29% | 70.71% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 48.27% | 51.73% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129163708 | A->T | INTERGENIC | None |