Detailed information of SNP:
|
SNP ID:
sf0129164698(Gbrowse)
Chromosome: chr01 Position: 29164698 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1233 | 56.77% | 43.23% |
| All Indica | 627 | 23.13% | 76.87% |
| All Japonica | 490 | 94.69% | 5.31% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 242 | 30.17% | 69.83% |
| Indica II | 201 | 10.95% | 89.05% |
| Indica Intermediate | 184 | 27.17% | 72.83% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 75.28% | 24.72% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129164698 | G->A | INTERGENIC | None |