Detailed information of SNP:
|
SNP ID:
sf0129213509(Gbrowse)
Chromosome: chr01 Position: 29213509 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.44% | 44.56% |
| All Indica | 799 | 27.66% | 72.34% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 46.40% | 53.60% |
| Indica II | 213 | 1.41% | 98.59% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129213509 | G->A | INTERGENIC | None |