Detailed information of SNP:
|
SNP ID:
sf0129269255(Gbrowse)
Chromosome: chr01 Position: 29269255 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 59.34% | 40.66% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 30.77% | 69.23% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129269255 | C->T | INTERGENIC | None |