Detailed information of SNP:
|
SNP ID:
sf0129295384(Gbrowse)
Chromosome: chr01 Position: 29295384 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.24% | 43.76% |
| All Indica | 799 | 26.66% | 73.34% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 213 | 2.35% | 97.65% |
| Indica Intermediate | 211 | 18.01% | 81.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129295384 | T->G | INTERGENIC | None |