Detailed information of SNP:
|
SNP ID:
sf0129303956(Gbrowse)
Chromosome: chr01 Position: 29303956 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.14% | 43.86% |
| All Indica | 799 | 26.78% | 73.22% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 213 | 2.35% | 97.65% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129303956 | G->T | INTERGENIC | None |