Detailed information of SNP:
|
SNP ID:
sf0129348740(Gbrowse)
Chromosome: chr01 Position: 29348740 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1227 | 52.08% | 47.92% |
| All Indica | 653 | 23.12% | 76.88% |
| All Japonica | 489 | 94.89% | 5.11% |
| Aus | 35 | 5.71% | 94.29% |
| Indica I | 267 | 37.08% | 62.92% |
| Indica II | 199 | 5.53% | 94.47% |
| Indica Intermediate | 187 | 21.93% | 78.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 77.01% | 22.99% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129348740 | T->C | LOC_Os01g51090(LOC_Os01g51090.1) | INTRON |