Detailed information of SNP:
|
SNP ID:
sf0129378970(Gbrowse)
Chromosome: chr01 Position: 29378970 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.36% | 47.64% |
| All Indica | 798 | 26.57% | 73.43% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 46.13% | 53.87% |
| Indica II | 213 | 1.88% | 98.12% |
| Indica Intermediate | 210 | 16.67% | 83.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129378970 | C->A | INTERGENIC | None |