Detailed information of SNP:



SNP ID: sf0129387701(Gbrowse)

Chromosome: chr01

Position: 29387701
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 76.99% 23.01%
All Indica799 100.00% 0.00%
All Japonica495 34.95% 65.05%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 12.87% 87.13%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate67 62.69% 37.31%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0129387701 T->C INTERGENIC None