Detailed information of SNP:
|
SNP ID:
sf0129405596(Gbrowse)
Chromosome: chr01 Position: 29405596 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 97.36% | 2.64% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 482 | 92.74% | 7.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 93.87% | 6.13% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 63 | 80.95% | 19.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129405596 | T->A | LOC_Os01g51154(LOC_Os01g51154.1) | INTRON |
| sf0129405596 | T->A | LOC_Os01g51154(LOC_Os01g51154.2) | INTRON |
| sf0129405596 | T->A | LOC_Os01g51154(LOC_Os01g51154.3) | INTRON |