Detailed information of SNP:
|
SNP ID:
sf0129429182(Gbrowse)
Chromosome: chr01 Position: 29429182 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 85.45% | 14.55% |
| All Indica | 797 | 80.05% | 19.95% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 63 | 50.79% | 49.21% |
| Indica I | 373 | 60.59% | 39.41% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129429182 | G->A | INTERGENIC | None |