Detailed information of SNP:
|
SNP ID:
sf0129441023(Gbrowse)
Chromosome: chr01 Position: 29441023 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 78.42% | 21.58% |
| All Indica | 717 | 79.78% | 20.22% |
| All Japonica | 491 | 87.17% | 12.83% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 307 | 65.80% | 34.20% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 198 | 82.83% | 17.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 35.96% | 64.04% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129441023 | T->A | INTERGENIC | None |