Detailed information of SNP:
|
SNP ID:
sf0129450169(Gbrowse)
Chromosome: chr01 Position: 29450169 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.42% | 43.58% |
| All Indica | 799 | 27.66% | 72.34% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 47.20% | 52.80% |
| Indica II | 213 | 2.82% | 97.18% |
| Indica Intermediate | 211 | 18.01% | 81.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129450169 | T->C | INTERGENIC | None |