Detailed information of SNP:
|
SNP ID:
sf0129468469(Gbrowse)
Chromosome: chr01 Position: 29468469 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1160 | 53.19% | 46.81% |
| All Indica | 627 | 92.50% | 7.50% |
| All Japonica | 495 | 4.44% | 95.56% |
| Aus | 7 | 57.14% | 42.86% |
| Indica I | 217 | 91.71% | 8.29% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 197 | 87.31% | 12.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 2 | 100.00% | 0.00% |
| Intermediate | 29 | 31.03% | 68.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129468469 | T->C | INTERGENIC | None |