Detailed information of SNP:
|
SNP ID:
sf0129471746(Gbrowse)
Chromosome: chr01 Position: 29471746 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 76.20% | 23.80% |
| All Indica | 792 | 76.52% | 23.48% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 370 | 58.92% | 41.08% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129471746 | G->A | INTERGENIC | None |