Detailed information of SNP:
|
SNP ID:
sf0129485664(Gbrowse)
Chromosome: chr01 Position: 29485664 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.87% | 43.13% |
| All Indica | 799 | 27.91% | 72.09% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 47.20% | 52.80% |
| Indica II | 213 | 3.29% | 96.71% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129485664 | C->G | LOC_Os01g51290(LOC_Os01g51290.2) | INTRON |
| sf0129485664 | C->G | LOC_Os01g51290(LOC_Os01g51290.1) | INTRON |