Detailed information of SNP:
|
SNP ID:
sf0129496641(Gbrowse)
Chromosome: chr01 Position: 29496641 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.70% | 42.30% |
| All Indica | 796 | 29.27% | 70.73% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 52.28% | 47.72% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 210 | 13.33% | 86.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129496641 | G->A | INTERGENIC | None |