Detailed information of SNP:
|
SNP ID:
sf0129560378(Gbrowse)
Chromosome: chr01 Position: 29560378 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.91% | 34.09% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129560378 | C->T | LOC_Os01g51410(LOC_Os01g51410.2) | Synonymous |
| sf0129560378 | C->T | LOC_Os01g51410(LOC_Os01g51410.1) | Synonymous |