Detailed information of SNP:
|
SNP ID:
sf0129576136(Gbrowse)
Chromosome: chr01 Position: 29576136 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1322 | 63.92% | 36.08% |
| All Indica | 703 | 35.42% | 64.58% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 294 | 34.01% | 65.99% |
| Indica II | 206 | 34.95% | 65.05% |
| Indica Intermediate | 203 | 37.93% | 62.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129576136 | A->G | INTERGENIC | None |