Detailed information of SNP:
|
SNP ID:
sf0129577028(Gbrowse)
Chromosome: chr01 Position: 29577028 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 59.56% | 40.44% |
| All Indica | 793 | 32.66% | 67.34% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 49.33% | 50.67% |
| Indica II | 210 | 13.81% | 86.19% |
| Indica Intermediate | 210 | 21.90% | 78.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129577028 | C->T | INTERGENIC | None |