Detailed information of SNP:
|
SNP ID:
sf0129590300(Gbrowse)
Chromosome: chr01 Position: 29590300 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 98.11% | 1.89% |
| All Indica | 756 | 98.94% | 1.06% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 98.60% | 1.40% |
| Indica II | 196 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 98.53% | 1.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129590300 | G->A | INTERGENIC | None |