Detailed information of SNP:
|
SNP ID:
sf0129594165(Gbrowse)
Chromosome: chr01 Position: 29594165 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 61.15% | 38.85% |
| All Indica | 724 | 39.09% | 60.91% |
| All Japonica | 492 | 86.99% | 13.01% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 344 | 25.29% | 74.71% |
| Indica II | 184 | 41.30% | 58.70% |
| Indica Intermediate | 196 | 61.22% | 38.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 33.71% | 66.29% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129594165 | G->C | INTERGENIC | None |