Detailed information of SNP:
|
SNP ID:
sf0129597397(Gbrowse)
Chromosome: chr01 Position: 29597397 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1258 | 53.74% | 46.26% |
| All Indica | 639 | 15.18% | 84.82% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 227 | 13.66% | 86.34% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 199 | 22.11% | 77.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0129597397 | C->A | INTERGENIC | None |